PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_6F280C355.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 248aa    MW: 27548 Da    PI: 5.4072
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_6F280C355.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.62.5e-241791471
                E2F_TDP 14 lklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                           +k++ek+e  g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Traes_1BL_6F280C355.1  1 MKVCEKVEGkGRTTYNEVADELVAEfadpnsnigspdpdnpntqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 79
                           589***9999************************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-38185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.1E-21179IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.4E-17180IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-27179IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094049.9E-1051248IPR015648Transcription factor DP
CDDcd144584.00E-4184187IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.62E-4186196No hitNo description
SMARTSM011383.4E-7686246IPR014889Transcription factor DP, C-terminal
PfamPF087812.4E-4187218IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKVCEKVEGK GRTTYNEVAD ELVAEFADPN SNIGSPDPDN PNTQQYDEKN IRRRVYDALN  60
VLMAMDIISK DKKEIQWKGL PRTSLSDIDK LKTEVIGLKG RIDKKSAYLQ ELQDQYVGLQ  120
NLVERNEQLY GSGDAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD  180
SFVLKAMGFS GKEETDGTVA LVANAVECSS ASNVYGHRSP QPARPNGIRL RTSPPIPGIL  240
KGRVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-311841793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727520.0AK372752.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573972.11e-168PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-110DPB_ARATH; Transcription factor-like protein DPB
TrEMBLW5A2X40.0W5A2X4_WHEAT; Uncharacterized protein
STRINGBRADI3G27520.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-111Transcription factor DP
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]